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- Gene Symbol:
-
SCARNA7 - Gene Name:
- small Cajal body-specific RNA 7
- Gene Aliases:
- U90
- Chromosome Location:
- Chr.3: 160514907 - 160515236 on Build GRCh38
- Species:
- Human
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: SCARNA7 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_003001.1 | 1 | 255 | 104 | ||
| GenBank mRNA | AY077740.1 | - | 1 | 255 | 104 | |
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream | tripartite motif containing 59 | TRIM59 |
IFT80L, MRF1, RNF104, TRIM57, TSBF1 |
-65.1kb | Sense | Chr. 3 - 160435503 - 160449838 on NCBI Build GRCh38 |
| Downstream | keratin 8 pseudogene 12 | KRT8P12 | KRT8L2 | 52.5kb | Anti-sense | Chr. 3 - 160567779 - 160569472 on NCBI Build GRCh38 |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC0300012971.hg.1This assay targets the same location as HTA transcript cluster(s) TC03001957.hg.1
Set Membership: |
Amplicon length greater than or equal to 101
3' Most
Detect Genomic DNA
Homo sapiens
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
ArrayStar
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Human Genome Microarray 4x44K v2 | A_33_P3284715 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4019 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4020 | - | - |
| Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray | 14532 | - | - |
| Agilent Whole Human Genome Microarray 4x44K v2 | A_33_P3284715 | - | - |
| SurePrint G3 Human GE Microarray G4851A | A_33_P3284715 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857218 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857212 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02717192 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15505427 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857219 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857232 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857238 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857222 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857239 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857221 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857215 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857237 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02717184 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857235 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857234 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857231 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857216 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857225 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857241 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857214 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857229 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857243 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02717199 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857223 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857213 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857221 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857216 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02717199 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857219 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857237 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857229 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857212 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857241 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857225 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857238 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857234 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857223 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857239 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02717184 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857235 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857243 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857232 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15505427 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857214 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P02717192 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857218 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857213 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857222 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857215 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22857231 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717205 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717201 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717187 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717184 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717203 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717211 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717207 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717199 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717191 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717209 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15505427 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717195 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717193 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717189 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717197 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717214 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717185 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P02717198 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Gene 1.0 ST Array | NR_003001_at | - | - |
| Affymetrix Human Gene 1.0 ST Array | 8091779 | - | - |
| Affymetrix Human Gene 1.1 ST Array | 8091778 | - | - |
| Affymetrix Human Transcriptome Array 2.0 | PSR03035014.hg.1 | ENST00000458797.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR03035014.hg.1 | NR_003001.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR03035014.hg.1 | TC03001957.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | TC0300012971.hg.1 | ENST00000458797.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0300012971.hg.1 | NR_003001.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC0300012971.hg.1 | ENST00000458797.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0300012971.hg.1 | NR_003001.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0300196984.hg.1 | ENST00000458797.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0300196984.hg.1 | NR_003001.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0300196984.hg.1 | TC0300012971.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR0300196984.hg.1 | NR_003001.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0300196984.hg.1 | ENST00000458797.1 | Ensembl |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A021865 | - | - |
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A021865 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| HumanHT-12 v4 Expression BeadChip | ILMN_3248663 | NR_003001.1 | human_transcriptome |
| HumanHT-12 v4 Expression BeadChip | ILMN_3248663 | AY077740.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3248663 | NR_003001.1 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3248663 | AY077740.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3248663 | NR_003001.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3248663 | AY077740.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3248663 | NR_003001.1 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3248663 | AY077740.1 | human_transcriptome |
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