Click-iT™ Plus EdU Alexa Fluor™ 594 Flow Cytometry Assay Kit
Click-iT™ Plus EdU Alexa Fluor™ 594 Flow Cytometry Assay Kit
Invitrogen™

Click-iT™ Plus EdU Alexa Fluor™ 594 Flow Cytometry Assay Kit

The Click-iT Plus EdU Alexa Fluor 594 Flow Cytometry Assay Kit provides a simplified, more robust assay for analyzing DNARead more
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Catalog number C10646
Price (USD)
754.00
Each
Add to cart
Price (USD)
754.00
Each
Add to cart
The Click-iT Plus EdU Alexa Fluor 594 Flow Cytometry Assay Kit provides a simplified, more robust assay for analyzing DNA replication in proliferating cells compared to traditional BrdU methods. Newly synthesized DNA is analyzed using the 532- or 561-nm laser of the flow cytometer. The Click-iT Plus formulation is compatible with standard fluorophores, including R-PE and R-PE tandems, as well as fluorescent proteins.

• Multiplexable—compatible with R-PE (and tandems) and fluorescent proteins
• Accurate—superior results compared to BrdU assays
• Fast—results in as little as 60 minutes

View selection guide for all Click-iT EdU and Click-iT Plus EdU assays for flow cytometry.

Multiplexable
Click-iT Plus Alexa Fluor 594 EdU assays can be used in conjunction with R-PE and R-PE tandems, as well as fluorescent proteins such as GFP and mCherry. The Alexa Fluor 594 labeling reagent is excited readily at either 532 or 561 nm and emits at 615 nm.

An Advanced Method Giving You Results Superior to BrdU
The most accurate method of proliferation analysis is direct measurement of DNA synthesis. Originally, this was performed through incorporation of radioactive nucleosides. This method was replaced by antibody-based detection of the nucleoside analog bromodeoxyuridine (BrdU). The Click-iT Plus EdU Flow Cytometry assay is a novel alternative to the BrdU assay. EdU (5-ethynyl-2´-deoxyuridine) is a thymidine analog that is incorporated into DNA during active DNA synthesis. Detection is based on click chemistry, which is a copper-catalyzed covalent reaction between an azide and an alkyne. In this application, the alkyne is found in the ethynyl moiety of EdU, while the azide is coupled to the Alexa Fluor dye. Standard flow cytometry methods are used for determining the percentage of S-phase cells in the population.

Mild Conditions Allow Use with Cell Cycle Dyes and Antibodies
The small size of the dye azide allows for efficient detection of the incorporated EdU using mild conditions, while standard aldehyde-based fixation and detergent permeabilization are sufficient for the Click-iT Plus detection reagent to gain access to the DNA. This is in contrast to BrdU assays that require DNA denaturation (using HCl, heat, or digestion with DNase) to expose the BrdU so that it can be detected with an anti-BrdU antibody. Sample processing for the BrdU assay can result in signal alteration of the cell cycle distribution, as well as destruction of antigen recognition sites when using the HCl method. In contrast, the easy-to-use Click-iT Plus EdU assay is compatible with cell cycle dyes. The Click-iT Plus EdU assay can also be multiplexed with antibodies against surface and intracellular markers, as well as conjugates labeled with standard fluorophores including R-PE, R-PE tandems, and fluorescent proteins (GFP and mCherry).

Quick and Simple Protocol
The Click-iT Plus EdU protocol is based on the aldehyde fixation and detergent permeabilization steps for immunohistochemical antibody labeling. However, EdU is compatible with other fixation/permeabilization agents including saponin and methanol. In just five steps you’ll be ready to analyze your cell proliferation data:

1. Treat cells with EdU.
2. Fix and permeabilize cells.
3. Detect S-phase cells with Click-iT Plus detection cocktail for 30 min.
4. Wash once.
5. Analyze.

Results can be seen in as little as 60 minutes in some circumstances, but we recommend 90 minutes for all applications.
For Research Use Only. Not for use in diagnostic procedures.
Specifications
Excitation/Emission532 or 561⁄615
Shipping ConditionRoom Temperature
Product LineAlexa Fluor™, Click-iT™
Unit SizeEach
Contents & Storage
Contains EdU (5-ethynyl-2' -deoxyuridine), AlexaFluor 594 picolyl azide, anhydrous dimethylsulfoxide (DMSO), Click-iT fixative, Click-iT saponin-based permeabilization and wash buffer, Copper Protectant, and Click-iT EdU buffer additive.

Store at 2–8°C. Dessicate and protect from light.

Frequently asked questions (FAQs)

A control for a Click-iT EdU labeling experiment uses no EdU and the Click-iT reaction using Alexa Fluor 594 azide. The mouse heart tissue sections are showing non-specific labeling in red, seen in particular clusters of cells. They don't overlap with DAPI. What is the problem?

The problem is likely not the Alexa Fluor 594 azide. Since there are no alkynes endogenous to mouse tissue, there is nothing for the dye-azide to bind to. Since the background doesn't overlap with nuclei (DAPI signal), this isn't an issue of unintended EdU labeling. This red is autofluorescence from red blood cells; they autofluoresce in the red and don't have nuclei. This can be confirmed by checking a completely unlabeled tissue section (no dye present at all) to see if they are still present and by examining the cells at high magnification and looking for corpuscular shape.

Find additional tips, troubleshooting help, and resources within our Cell Analysis Support Center.

Can I combine Click-iT or Click-iT Plus reactions with phalloidin conjugates used for actin staining?

We do not recommend using phalloidin conjugates for staining actin in combination with traditional Click-iT or Click-iT Plus reactions since phalloidin is extremely sensitive to the presence of copper.

For staining actin in combination with traditional Click-iT or Click-iT Plus reactions, we recommend using anti-α-actin antibodies for staining actin in the cytoskeleton. You can find a list of our actin antibodies here.

Another option would be to use the Click-iT Plus Alexa Fluor Picolyl Azide Toolkit (Cat. Nos. C10641, C10642, C10643). These Click-iT Plus toolkits provide Copper and Copper protectant separately which makes it easier to titrate the copper concentration to obtain optimal labeling with minimal copper-mediated damage. You may need to optimize the click reaction with the lowest possible concentration of copper and then perform the phalloidin staining.

Find additional tips, troubleshooting help, and resources within our Cell Analysis Support Center.

With the Click-iT Plus EdU flow cytometry kits, my live-cell sample includes EDTA in the buffer/medium. Would this cause any problems with EdU incorporation or the click reaction?

The presence of EDTA in the cell buffer/media would not be an issue for EdU incorporation and it should be mostly gone from the sample after fixation and permeabilization. EDTA must not be present during the click reaction.

Find additional tips, troubleshooting help, and resources within our Cell Analysis Support Center.

With the Click-iT Plus EdU flow cytometry kits, I am seeing three distinct peaks in my histogram instead of two peaks. What may be the reason for this?

The middle peak would most likely be from EdU-incorporated cells that have divided, each daughter cell receiving roughly half the incorporated EdU. To avoid this, we recommend shortening the incubation time of EdU with the cells.

Find additional tips, troubleshooting help, and resources within our Cell Analysis Support Center.

Can I use the Click-iT Plus EdU imaging kits for flow cytometry?

We do not recommend doing this. The signal provided with the imaging kits may be too high for use on a flow cytometer.

Find additional tips, troubleshooting help, and resources within our Cell Analysis Support Center.